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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134968042_134968678_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134968042 - 134968678
Intron Length:
637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
CTGGACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCAAAA
U12 Branch Point Sequence:
ATTTCCTGAGCT
Flanking Amino Acid:
NIIDLFLYQPQYLNAIQTMC
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
72.9
39.3
Major BPS
52.9
0.07
1.1
59.3
35.9
Major PPT
73.8
0.54
1
69.3
41.4
Minor 5ss
44.1
-0.6
2.9
63.9
41.5
Minor BPS
69.7
0.7
1.7
87.92
36.8

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725