About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134968806_134970674_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134968806 - 134970674
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGACT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTATTT
Flanking Amino Acid:
LKDLVKVIQQESYTYRDPIT
Intron Amino Acid Position:
284

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.98
0.8
85.2
31.7
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.2
0.72
1
80
37.3
Minor 5ss
34.9
-1.7
3.2
49.5
46.5
Minor BPS
69.6
0.69
1.7
89
35.8

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725