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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134971848_134976711_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
134971848 - 134976711
Intron Length:
4864

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATCTCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTCTGATAAGT
Flanking Amino Acid:
FCRIHQCISIGMLADKLNMT
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
73.9
32.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
76
0.58
0.8
74
36.3
Minor 5ss
36.8
-1.5
3
39
46.2
Minor BPS
45.6
-0.2
2.4
73.75
43

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725