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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_134977168_134978270_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
134977168 - 134978270
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
TATTTTATTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGATCCTTATTT
Flanking Amino Acid:
KKLNQSGRSEAPNWATQDSG
Intron Amino Acid Position:
434

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82
0.72
0.8
74.9
39.5
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
69.8
0.7
1.6
81.82
39.7

Associated Gene:

Gene:
EIF3E
Ensembl Gene ID:
ENSAPLG00000006091
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006359
134955719 - 134978443
22725