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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135004164_135056606_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135004164 - 135056606
Intron Length:
52443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTATTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATTT
Flanking Amino Acid:
QASRWRRSKRASYGPNPICK
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89
0.88
0.7
84.2
30.3
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
71.3
0.75
1.5
85.73
34.6

Associated Gene:

Gene:
RSPO2
Ensembl Gene ID:
ENSAPLG00000007280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019396
135003867 - 135114490
110624
ENSAPLT00000007550
135003867 - 135069954
66088
ENSAPLT00000041064
135003867 - 135069733
65867
ENSAPLT00000034935
135003867 - 135242119
238253