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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135056796_135067302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135056796 - 135067302
Intron Length:
10507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTGATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATTCCTTATGA
Flanking Amino Acid:
LRTPDMNRCSRCRIENCDSC
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.7
33.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
78.4
0.64
0.9
76.7
36.5
Minor 5ss
38.2
-1.3
3
49.5
41.2
Minor BPS
64.6
0.45
1.9
76.55
40.6

Associated Gene:

Gene:
RSPO2
Ensembl Gene ID:
ENSAPLG00000007280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019396
135003867 - 135114490
110624
ENSAPLT00000007550
135003867 - 135069954
66088
ENSAPLT00000041064
135003867 - 135069733
65867
ENSAPLT00000034935
135003867 - 135242119
238253