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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135067447_135068831_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135067447 - 135068831
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTGTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GAATTGATAATG
Flanking Amino Acid:
AALEELMECVEGCEVGQWSE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
77.8
38.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.4
0.68
1
80.8
36.8
Minor 5ss
34.3
-1.8
3.1
42
44.5
Minor BPS
42.8
-0.6
2.2
46.78
40

Associated Gene:

Gene:
RSPO2
Ensembl Gene ID:
ENSAPLG00000007280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034935
135003867 - 135242119
238253
ENSAPLT00000019396
135003867 - 135114490
110624
ENSAPLT00000007550
135003867 - 135069954
66088
ENSAPLT00000041064
135003867 - 135069733
65867