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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135069021_135069109_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135069021 - 135069109
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTATTTCTAACT
Flanking Amino Acid:
CKMAMRHCPGAEAETLSALP
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
83.1
0.75
0.9
74.5
40
Minor 5ss
41.4
-1
3.1
56.1
48
Minor BPS
60.5
0.41
1.7
76.75
40

Associated Gene:

Gene:
RSPO2
Ensembl Gene ID:
ENSAPLG00000007280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041064
135003867 - 135069733
65867