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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135069021_135113993_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135069021 - 135113993
Intron Length:
44973

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
CKMAMRHCPGGRRATKTKEK
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
41.4
-1
3.1
56.1
48
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
RSPO2
Ensembl Gene ID:
ENSAPLG00000007280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019396
135003867 - 135114490
110624