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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135244807_135245191_F

Intron Information:

Intron Rank:
131819
Intron Class:
major
Intron Phase:
Intron Coordinates:
135244807 - 135245191
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAATT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTACTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
TCTTCCTTACTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
87
27.5
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
73.9
0.54
0.9
66.9
38.3
Minor 5ss
38.8
-1.3
3.2
57.6
46.6
Minor BPS
72.3
0.7
1.6
78.78
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020755
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044454
135243917 - 135257955
14039