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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135245315_135257666_F

Intron Information:

Intron Rank:
131820
Intron Class:
major
Intron Phase:
Intron Coordinates:
135245315 - 135257666
Intron Length:
12352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAC
U12 Branch Point Sequence:
TTTTTTTTTCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
67.4
0.43
1.3
78.4
35.2
Major PPT
82.4
0.73
0.7
78.1
23.8
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020755
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044454
135243917 - 135257955
14039