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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1352724_1353286_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1352724 - 1353286
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGGGGGTTCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
CTGAAATTAACC
Flanking Amino Acid:
DMIKFGPDNKSIDIYIKKDA
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
74.9
37
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
58.7
0.2
1.2
53.8
49.8
Minor 5ss
30.2
-2.3
3.3
38.5
46.8
Minor BPS
49.6
-0
1.9
61.46
43.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022471
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017278
1352538 - 1355792
3255