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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1353384_1353682_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1353384 - 1353682
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGACTT
5'SS Class:
major
3'SS Sequence:
CCTCTCCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCGTAG
U12 Branch Point Sequence:
TTTTTCTTGGTC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
71.5
40.2
Major BPS
40
-0.6
1.7
37.1
44.2
Major PPT
79.5
0.66
0.7
73.1
25.1
Minor 5ss
31.1
-2.2
3.5
46.9
48.4
Minor BPS
47.9
-0.1
3.4
76.61
34.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022471
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017278
1352538 - 1355792
3255