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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135356771_135367374_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135356771 - 135367374
Intron Length:
10604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TATTTCATTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTCATT
Flanking Amino Acid:
HEILKIHEKNSLLEHKILEM
Intron Amino Acid Position:
192

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
81
0.7
0.8
79.1
33.8
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
61.3
0.44
1.9
84.41
36.8

Associated Gene:

Gene:
ANGPT1
Ensembl Gene ID:
ENSAPLG00000007378
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007656
135273296 - 135452966
179671