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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135367608_135385705_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135367608 - 135385705
Intron Length:
18098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTCTCATATTT
Flanking Amino Acid:
TLITLCSKEGVLLKNAKKEE
Intron Amino Acid Position:
270

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
49
0
1.8
70.9
40

Associated Gene:

Gene:
ANGPT1
Ensembl Gene ID:
ENSAPLG00000007378
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007656
135273296 - 135452966
179671