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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1353845_1355734_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
1353845 - 1355734
Intron Length:
1890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAGCCG
5'SS Class:
major
3'SS Sequence:
CTTTACATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ATATCTTTACAT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
56.4
42.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
81.6
0.71
0.8
78.2
34.6
Minor 5ss
25
-2.9
3.1
30.2
43
Minor BPS
60.3
0.4
1.7
76.48
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022471
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017278
1352538 - 1355792
3255