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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135407269_135440773_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135407269 - 135440773
Intron Length:
33505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATC
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTGTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAT
U12 Branch Point Sequence:
CTTTCAGTGACA
Flanking Amino Acid:
FHIGNEKQNYRLYLKGHSGT
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.14
0.6
94.3
17.7
Major BPS
71.2
0.53
1
61
37.5
Major PPT
79.7
0.67
0.9
76.5
37.6
Minor 5ss
40.3
-1.1
2.8
54
43.3
Minor BPS
50.5
0.01
2.3
71.47
40.8

Associated Gene:

Gene:
ANGPT1
Ensembl Gene ID:
ENSAPLG00000007378
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007656
135273296 - 135452966
179671