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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13549938_13553174_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13549938 - 13553174
Intron Length:
3237

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
AGTGCTCTGACT
Flanking Amino Acid:
VTLNYNVTIVGKIWLMLIIL
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.13
0.6
93.5
20.3
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.4
0.64
0.9
70.2
41.3
Minor 5ss
38.4
-1.3
2.8
52.3
44.3
Minor BPS
51.3
0.12
1.8
70.79
40.2

Associated Gene:

Gene:
GJD4
Ensembl Gene ID:
ENSAPLG00000013760
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014328
13548748 - 13554557
5810