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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135602596_135655307_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135602596 - 135655307
Intron Length:
52712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCATAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GTTTTCATAATA
Flanking Amino Acid:
DMDSLAFGGGGNAQMDSWSS
Intron Amino Acid Position:
853

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84
30.2
Major BPS
100
1.24
0.5
100
0
Major PPT
71.7
0.49
0.9
67.6
37.8
Minor 5ss
41.4
-1
2.9
49.9
46.4
Minor BPS
66.9
0.53
1.6
76.77
33.9

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045628
135602517 - 135885217
282701