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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135639673_135644302_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135639673 - 135644302
Intron Length:
4630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGAAAT
U12 Branch Point Sequence:
AAATGCAAAACT
Flanking Amino Acid:
AVRIKRPVPSFASKLSEERS
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
78
31.1
Major BPS
58.4
0.21
1.2
65
38.7
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
37.6
-1.4
2.8
48.3
41.8
Minor BPS
45.3
-0.2
2.2
65.64
44.3

Associated Gene:

Gene:
ABRA
Ensembl Gene ID:
ENSAPLG00000007622
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007903
135638924 - 135644780
5857