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Intron Name: Anas_platyrhynchos_platyrhynchos_2_135654623_135655307_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135654623 - 135655307

Intron Length:

685

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

GTCTGTCTTGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TTCATATTAATA

Flanking Amino Acid:

DMDSLAFGGGGGEFALWLDG

Intron Amino Acid Position:

836

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.4

0.91

0.9

30.2

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

79.5

0.66

0.9

72.9

37.4

Minor 5ss

41.4

-1

2.9

49.9

46.4

Minor BPS

58.7

0.27

1.6

68.65

37.9

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000044413

135654487 - 135869729

215243

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000040436

135654487 - 135722209

67723