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Intron Name: Anas_platyrhynchos_platyrhynchos_2_135655382_135655952_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135655382 - 135655952

Intron Length:

571

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAAGA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCATTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTTTTTTTCATT

Flanking Amino Acid:

FLFTFSPDFEVFKWTGDNMF

Intron Amino Acid Position:

829

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.8

33.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

84.7

0.78

0.7

86.7

25.9

Minor 5ss

32.8

-2

2.9

40.7

45.1

Minor BPS

61.6

0.45

1.7

79.54

37.3

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000044413

135654487 - 135869729

215243

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701