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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135656049_135661416_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135656049 - 135661416
Intron Length:
5368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTATTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTCTCAAGT
Flanking Amino Acid:
LLVIKDSDGQIFGALASEPF
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
75.1
35.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.5
0.8
0.9
80
37.5
Minor 5ss
32.4
-2
3.2
42.3
44.8
Minor BPS
67.4
0.63
1.8
87.74
37.8

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018124
135653580 - 135729685
76106
ENSAPLT00000041511
135653580 - 135795398
141819
ENSAPLT00000015460
135651691 - 135795398
143708
ENSAPLT00000040436
135654487 - 135722209
67723
ENSAPLT00000046883
135654487 - 135885217
230731
ENSAPLT00000033448
135653580 - 135729685
76106
ENSAPLT00000045628
135602517 - 135885217
282701
ENSAPLT00000019761
135653580 - 135729554
75975
ENSAPLT00000044413
135654487 - 135869729
215243