Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135661570 - 135662278

Intron Length:

709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATTTACT

5'SS Class:

major

3'SS Sequence:

TTCCTCTTAACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTCCTCTTAACA

Flanking Amino Acid:

ELLQPEHIEKLTKSLPPRTI

Intron Amino Acid Position:

746

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

34.3

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

80.3

0.68

0.8

76.7

30.5

Minor 5ss

44.5

-0.6

2.5

61.4

42.8

Minor BPS

77.2

0.85

1.2

80.35

35.4

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701

ENSAPLT00000027900

135473467 - 135729554

256088

ENSAPLT00000044413

135654487 - 135869729

215243

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135661570_135662278_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: