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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135662405_135665707_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135662405 - 135665707
Intron Length:
3303

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCACTCT
5'SS Class:
major
3'SS Sequence:
ATTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCTGTGATT
Flanking Amino Acid:
ELRTLCRRLQITTREDTNSK
Intron Amino Acid Position:
704

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
61.9
39.3
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
85.2
0.79
0.7
81.3
29.9
Minor 5ss
39.3
-1.2
3.3
56.7
47.5
Minor BPS
63.4
0.5
2
86.34
34.1

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027900
135473467 - 135729554
256088
ENSAPLT00000045628
135602517 - 135885217
282701
ENSAPLT00000019761
135653580 - 135729554
75975
ENSAPLT00000044413
135654487 - 135869729
215243
ENSAPLT00000018124
135653580 - 135729685
76106
ENSAPLT00000041511
135653580 - 135795398
141819
ENSAPLT00000015460
135651691 - 135795398
143708
ENSAPLT00000040436
135654487 - 135722209
67723
ENSAPLT00000046883
135654487 - 135885217
230731