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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135662405_135685613_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
135662405 - 135685613
Intron Length:
23209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTCTGTGATT
Flanking Amino Acid:
TTEDAAKEWEITTREDTNSK
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
85.2
0.79
0.7
81.3
29.9
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
63.4
0.5
2
86.34
34.1

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033448
135653580 - 135729685
76106