Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135685777 - 135688701

Intron Length:

2925

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAG

5'SS Class:

strong_major

3'SS Sequence:

TTGACTTCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTATCAT

U12 Branch Point Sequence:

CATTACTTGACT

Flanking Amino Acid:

HEYWFAVPQERTDHLYVFFI

Intron Amino Acid Position:

622

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.7

33.7

Major BPS

70.5

0.51

1.3

41.2

Major PPT

74.4

0.55

0.9

66.5

40.5

Minor 5ss

32.8

-2

2.9

39.4

46.1

Minor BPS

69.6

0.7

1.5

81.3

40.2

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027900

135473467 - 135729554

256088

ENSAPLT00000044413

135654487 - 135869729

215243

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135685777_135688701_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: