Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135693001 - 135696372

Intron Length:

3372

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAT|GTAAGATAG

5'SS Class:

major

3'SS Sequence:

ATTTGCTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

ATTTGCTCAACA

Flanking Amino Acid:

VDSKIKDSLSIDIEQLSVRE

Intron Amino Acid Position:

302

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.7

0.68

70.7

35.9

Major BPS

84.4

0.85

1.1

34.5

Major PPT

72.6

0.51

38.7

Minor 5ss

39.7

-1.2

3.1

44.9

Minor BPS

63.6

0.42

78.28

38.2

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701

ENSAPLT00000027900

135473467 - 135729554

256088

ENSAPLT00000044413

135654487 - 135869729

215243

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135693001_135696372_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: