Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135703293 - 135707899

Intron Length:

4607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAGGTATA

5'SS Class:

major

3'SS Sequence:

TATTCCCTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTTTTTAATA

Flanking Amino Acid:

EAEFDKATINDPDGVQRKES

Intron Amino Acid Position:

190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

1.1

80.1

34.8

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.65

0.8

70.8

35.7

Minor 5ss

40.3

-1.1

3.1

54.9

42.7

Minor BPS

82.2

1.01

0.9

86.33

25.3

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701

ENSAPLT00000027900

135473467 - 135729554

256088

ENSAPLT00000044413

135654487 - 135869729

215243

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135703293_135707899_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: