Gene Search

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

135708020 - 135709136

Intron Length:

1117

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACTATTA

5'SS Class:

major

3'SS Sequence:

ATCTTCTTTATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAC

U12 Branch Point Sequence:

TAACTTCTAACT

Flanking Amino Acid:

LFARAVVPGQILYVPDPDYI

Intron Amino Acid Position:

150

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.3

0.55

1.1

70.8

35.7

Major BPS

84.6

0.86

0.8

83.9

22.3

Major PPT

81.8

0.72

0.7

76.8

31.3

Minor 5ss

40.5

-1.1

3.3

56.6

47.5

Minor BPS

54.8

0.23

1.6

72.11

38.2

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019761

135653580 - 135729554

75975

ENSAPLT00000041511

135653580 - 135795398

141819

ENSAPLT00000018124

135653580 - 135729685

76106

ENSAPLT00000040436

135654487 - 135722209

67723

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000015460

135651691 - 135795398

143708

ENSAPLT00000033448

135653580 - 135729685

76106

ENSAPLT00000045628

135602517 - 135885217

282701

ENSAPLT00000027900

135473467 - 135729554

256088

ENSAPLT00000044413

135654487 - 135869729

215243

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135708020_135709136_R

Intron Information:

Sequence Information:

Site Scores:

Associated Gene:

Associated Transcripts: