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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135716730_135721447_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135716730 - 135721447
Intron Length:
4718

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
CAATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTTGCCTCAATT
Flanking Amino Acid:
ESTFSQPKFNDTGQKKTPDK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
83
0.74
0.8
80.7
36.3
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
66
0.58
1.7
81.06
40.8

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040436
135654487 - 135722209
67723