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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135716730_135789228_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
135716730 - 135789228
Intron Length:
72499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
GTTGCCTCAATT
Flanking Amino Acid:
RSELKRYYTIDTGQKKTPDK
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
83
0.74
0.8
80.7
36.3
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
66
0.58
1.7
81.06
40.8

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045628
135602517 - 135885217
282701
ENSAPLT00000044413
135654487 - 135869729
215243
ENSAPLT00000041511
135653580 - 135795398
141819
ENSAPLT00000015460
135651691 - 135795398
143708
ENSAPLT00000046883
135654487 - 135885217
230731