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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13571754_13577254_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13571754 - 13577254
Intron Length:
5501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCATGTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTTCTCTCATGT
Flanking Amino Acid:
LSRDRACKLEAISRLCEDKY
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
77.8
0.63
0.9
68.7
41.7
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
45.2
-0.2
2
64.89
45.6

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119