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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13577418_13584258_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13577418 - 13584258
Intron Length:
6841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCCA
5'SS Class:
major
3'SS Sequence:
CTTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTTTTCACA
Flanking Amino Acid:
QILKDITVEDMNELERQFLE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
69.7
36.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.6
0.87
0.6
83.6
24.8
Minor 5ss
31.5
-2.1
2.9
38.2
39.5
Minor BPS
64.8
0.46
1.7
76.76
34.5

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119