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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135789426_135795232_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
135789426 - 135795232
Intron Length:
5807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTGTG
5'SS Class:
major
3'SS Sequence:
AAATTGTCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACTGCCTTAAAT
Flanking Amino Acid:
SAVMLPGIITRLKKKSQSVD
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1.2
70
40.5
Major BPS
80
0.75
1
78.6
31
Major PPT
67.2
0.39
1
63.5
42.9
Minor 5ss
38.7
-1.3
3
49.5
46.8
Minor BPS
69.3
0.68
1.5
79.57
42.3

Associated Gene:

Gene:
OXR1
Ensembl Gene ID:
ENSAPLG00000014816
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041511
135653580 - 135795398
141819
ENSAPLT00000015460
135651691 - 135795398
143708
ENSAPLT00000046883
135654487 - 135885217
230731
ENSAPLT00000045628
135602517 - 135885217
282701