Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_135795399_135885136_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

135795399 - 135885136

Intron Length:

89738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTAGTTCT

5'SS Class:

strong_major

3'SS Sequence:

GCTTCTCTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CACTAAC

U12 Branch Point Sequence:

GACTCACTAACG

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.9

0.82

1.1

82.6

30.6

Major BPS

64.5

0.36

65.2

28.2

Major PPT

77.6

0.62

0.8

Minor 5ss

39.2

-1.2

2.7

51.6

44.8

Minor BPS

48.5

-0.2

55.78

44.6

Associated Gene:

Gene:

OXR1

Ensembl Gene ID:

ENSAPLG00000014816

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046883

135654487 - 135885217

230731

ENSAPLT00000045628

135602517 - 135885217

282701