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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13596220_13596315_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13596220 - 13596315
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGGAA
U12 Branch Point Sequence:
TTTTGTTTCAGT
Flanking Amino Acid:
IFDENLHPLSKSEVPPDYDK
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
78
32.6
Major BPS
62.2
0.3
1.4
63.4
44.3
Major PPT
79.1
0.66
0.7
78.2
29.8
Minor 5ss
41
-1
2.7
51.5
44.9
Minor BPS
49.3
0.03
2.4
78.9
44

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119