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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13596374_13600161_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13596374 - 13600161
Intron Length:
3788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TAATACTTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTGGTTTTAATA
Flanking Amino Acid:
ALAIYYHIKNRDTDGRMLLD
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
79.4
28.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
73.7
0.53
0.9
70.7
40.2
Minor 5ss
38.1
-1.3
3.1
48.5
47.7
Minor BPS
64.9
0.46
1.3
69.78
37.7

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119