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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13600198_13603580_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13600198 - 13603580
Intron Length:
3383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTTCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAC
U12 Branch Point Sequence:
TTTTTCTTTACA
Flanking Amino Acid:
SQPNLKYTIKCVALAIYYHI
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
66.4
35.3
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
33.8
-1.8
3
37.8
42.2
Minor BPS
77.1
0.85
1.5
87.01
30.8

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119