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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136019883_136021291_R

Intron Information:

Intron Rank:
142731
Intron Class:
major
Intron Phase:
Intron Coordinates:
136019883 - 136021291
Intron Length:
1409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGTTTCTTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
80.1
34.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
81.7
0.71
0.8
76.8
32
Minor 5ss
37.5
-1.4
2.8
47
41.7
Minor BPS
69.5
0.69
1.6
83.97
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024068
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028274
136019228 - 136024692
5465