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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136021385_136023852_R

Intron Information:

Intron Rank:
142732
Intron Class:
major
Intron Phase:
Intron Coordinates:
136021385 - 136023852
Intron Length:
2468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATAAG
5'SS Class:
major
3'SS Sequence:
TCCTATCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
CTTTCTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
73
37.7
Major BPS
78.6
0.71
1
78.6
31
Major PPT
81.5
0.71
0.8
72.8
37.2
Minor 5ss
34.6
-1.8
2.8
38.6
40.9
Minor BPS
74.1
0.75
1.1
77.53
33.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024068
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028274
136019228 - 136024692
5465