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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_13603682_13614240_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13603682 - 13614240
Intron Length:
10559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
ATGTTTTTCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
ATGTTTTTCATA
Flanking Amino Acid:
EKRKSLYINHHPPGQLRRKY
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.3
77.6
32.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
77.2
0.61
0.8
72.9
36.9
Minor 5ss
33.4
-1.9
3.2
39.2
39.9
Minor BPS
53.1
0.09
1.7
64.28
37.1

Associated Gene:

Gene:
CCNY
Ensembl Gene ID:
ENSAPLG00000013783
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014381
13571637 - 13693755
122119