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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136044532_136044759_R

Intron Information:

Intron Rank:
148284
Intron Class:
major
Intron Phase:
Intron Coordinates:
136044532 - 136044759
Intron Length:
228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGGAT
U12 Branch Point Sequence:
TTGGATTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
62.6
0.31
1.4
63.1
44.4
Major PPT
82.2
0.72
0.8
73.9
36.7
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
51
0.03
1.7
64.89
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035032
136044468 - 136047899
3432