Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136046166_136052984_F

Intron Information:

Intron Rank:

128674

Intron Class:

major

Intron Phase:

Intron Coordinates:

136046166 - 136052984

Intron Length:

6819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATATAT

5'SS Class:

strong_major

3'SS Sequence:

ACCACATCCTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

TTCTCCTGAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.8

0.77

0.9

79.6

29.2

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

63.3

0.3

0.9

58.5

36.6

Minor 5ss

39.7

-1.2

3.1

56.3

47.9

Minor BPS

78.2

0.86

1.3

83.45

35.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019264

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029781

136045692 - 136054205

8514

ENSAPLT00000024749

136045692 - 136067651

21960

ENSAPLT00000045605

136045692 - 136055473

9782