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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136053202_136055409_F

Intron Information:

Intron Rank:
128678
Intron Class:
major
Intron Phase:
Intron Coordinates:
136053202 - 136055409
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CTGTCCTCTACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
80
0.68
0.8
72.7
37.5
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
58.4
0.35
2
76.35
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045605
136045692 - 136055473
9782