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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136053202_136067383_F

Intron Information:

Intron Rank:
128675
Intron Class:
major
Intron Phase:
Intron Coordinates:
136053202 - 136067383
Intron Length:
14182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
GCTTCTGAAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
88.3
0.86
0.6
85.2
22.2
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
44.4
-0.5
2.3
50.88
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019264
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024749
136045692 - 136067651
21960