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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136055630_136063754_R

Intron Information:

Intron Rank:
148283
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
136055630 - 136063754
Intron Length:
8125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
GGGTTTTGGATAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
56.7
0.15
1.1
53.4
46
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027130
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032030
136055118 - 136064122
9005