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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136094833_136098251_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136094833 - 136098251
Intron Length:
3419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
ATCTTTTCTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTCACTTTAACT
Flanking Amino Acid:
ALEMHLNSHSGVKMEEFLPP
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.6
0.71
0.7
77
31.1
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
73.2
0.81
1.3
81.36
40.2

Associated Gene:

Gene:
ZFPM2
Ensembl Gene ID:
ENSAPLG00000015698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028095
136091344 - 136408264
316921
ENSAPLT00000025628
136091344 - 136408264
316921
ENSAPLT00000036015
136091344 - 136327111
235768
ENSAPLT00000016358
136091344 - 136112984
21641
ENSAPLT00000034916
136091344 - 136408264
316921
ENSAPLT00000032650
136091344 - 136330469
239126