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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136098477_136102690_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136098477 - 136102690
Intron Length:
4214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
TATTTGCTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTATAT
U12 Branch Point Sequence:
CTAACCTGCACC
Flanking Amino Acid:
ASILPTAIVNKDIFPCKSCG
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
61.5
0.29
1.3
61
45.5
Major PPT
79.5
0.66
0.8
74.1
36.3
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
48.6
-0.1
2
61.01
43.8

Associated Gene:

Gene:
ZFPM2
Ensembl Gene ID:
ENSAPLG00000015698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032650
136091344 - 136330469
239126
ENSAPLT00000028095
136091344 - 136408264
316921
ENSAPLT00000025628
136091344 - 136408264
316921
ENSAPLT00000036015
136091344 - 136327111
235768
ENSAPLT00000016358
136091344 - 136112984
21641
ENSAPLT00000034916
136091344 - 136408264
316921