About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_136102898_136200365_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
136102898 - 136200365
Intron Length:
97468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACACA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTACTT
Flanking Amino Acid:
NKNNCIVYSKGGQLWCTTTK
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74
36.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.3
0.66
0.8
74.4
30
Minor 5ss
39
-1.2
2.9
49.8
46.2
Minor BPS
62.1
0.46
1.8
84.39
36.6

Associated Gene:

Gene:
ZFPM2
Ensembl Gene ID:
ENSAPLG00000015698
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025628
136091344 - 136408264
316921
ENSAPLT00000036015
136091344 - 136327111
235768
ENSAPLT00000034916
136091344 - 136408264
316921
ENSAPLT00000032650
136091344 - 136330469
239126
ENSAPLT00000028095
136091344 - 136408264
316921